干旱区研究

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2014 , Vol. 31 >Issue 6: 1100 - 1108

DOI: https://doi.org/10.13866/j.azr.2014.06.18

生物资源

新疆十字花科短命植物系统发育关系及分化时间

  • 李岩 ,
  • 冯缨 ,
  • 刘斌 ,
  • 吕光辉 ,
  • 王习勇
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  • 1.中国科学院新疆生态与地理研究所,新疆 乌鲁木齐 830011;
    2.新疆大学资源与环境科学学院,新疆 乌鲁木齐 830046;
    3.中国科学院大学,北京 100049
李岩(1984-),男,博士研究生,主要从事植物系统发育研究. E-mail:liyan1006@ms.xjb.ac.cn
冯缨. E-mail:luckfy@ms.xjb.ac.cn

收稿日期: 2014-03-28

  修回日期: 2014-06-04

  网络出版日期: 2014-11-25

基金资助

国家自然科学基金项目(Y326021001);战略生物资源科技支撑体系运行专项XJBI标本采集经费(Y136141001)

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Phylogenetic Relationships and Divergence Time of Brassicaceae Ephemeral Plants in Xinjiang

  • LI Yan ,
  • FENG Ying ,
  • LIU Bin ,
  • LV Guang-hui ,
  • WANG Xi-yong
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  • 1. Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, Xinjiang, China;
    2. College of Resource and Environment Sciences, Xinjiang University, Urumqi 830046, Xinjiang, China;
    3. University of Chinese Academy of Sciences, Beijing 100049, China

Received date: 2014-03-28

  Revised date: 2014-06-04

  Online published: 2014-11-25

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摘要

利用核ITS、叶绿体trnL-F(含trnL内含子和trnL-trnF间隔区)DNA序列,研究分布在新疆的十字花科短命植物的系统发育关系,探讨本区十字花科短命植物与非短命植物之间的系统关系,并利用分子钟原理,估算短命植物的分化时间。主要研究结果如下:短命植物不是单系群,而是聚为多个分支,镶嵌在非短命植物类群中;短命植物分支(属/种)分别与分类学上相近的非短命植物分类单位(近缘属/同属物种)具有很近的系统发育关系,说明短命植物并非单一起源,其分化和发育并未超越属种的演化关系。十字花科短命植物的亲缘关系:涩荠属、丝叶芥属、鸟头荠属、念珠芥属、四齿芥属、绵果荠属、棒果芥属和紫罗兰属亲缘关系较近;离子芥属、脱喙荠属和异果芥属具有较近的亲缘关系;舟果荠属、菘蓝属、厚翅荠属3个属的物种嵌合在一起,并与线果芥属的关系较近;四棱荠属和螺喙荠属系统发育关系很近;庭荠属、独行菜属、高河菜属的短命植物均与同属的物种聚在一起,高河菜属与四棱荠属、螺喙荠属的关系较近。计算表明,涩荠属短命植物的分化时间大致在14~6 Ma,即中新世中期至晚期,要早于第三纪末第四纪初的结论。短命植物在这个时间段的分化可能与期间青藏高原的不断隆起密切相关,青藏高原的隆起导致亚洲内陆气候的干旱化以及干旱、半干旱区逐渐形成,促进了短命植物在新疆的进化和发育。

关键词： 十字花科; 短命植物; 系统发育; ITS; trnL-F; 分化时间

本文引用格式

李岩 , 冯缨 , 刘斌 , 吕光辉 , 王习勇 . 新疆十字花科短命植物系统发育关系及分化时间[J]. 干旱区研究, 2014 , 31(6) : 1100 -1108 . DOI: 10.13866/j.azr.2014.06.18

Abstract

Using nrDNA ITS and cpDNA trnL-F(combination of trnL intron and trnL-trnF intergenic spacer)DNA sequences, this paper investigated the phylogenetic relationships of the Brassicaceae ephemeral plants in Xinjiang and explored the systematic relationship between ephemeral plants and non-ephemeral plants. The divergennt time of the ephemeral plants was estimated by using molecular clock theory. The main results of the research are as follows: The ephemeral plants are not recovered as a monophyletic group, but rather cluster into several clades which nest in the non-ephemeral plants; The ephemeral groups (genus/species) have close phylogenetic relationships with their taxonomic closely related non-ephemeral units (genus/species from same genus). The phylogenetic relationships of the ephemeral plants, Malcolmia, Leptaleum,Euclidium,Neotorularia, Tetracme, Lachnoloma, Sterigmostemum and Matthiola are grouped together, Sterigmostemum and Matthiola are more closely related and they are sister to the lineage comprised of Malcolmia,Leptaleum,Euclidium,Neotorularia,Tetracme and Lachnoloma; Chorispora, Litwinowia and Diptychocarpus are closely related; Tauscheria,Isatis and Pachypterygium have close phylogenetic relationship that members of the three genus nest with each other and they together have close relationship with Conringia; Goldbachia and Spirorrhynchus unit together and display close phylogenetic status; The ephemeral plants of Alyssum,Lepidium,Megacarpaea are grouped with the non-ephemeral members from the same genera, separately. It is likely that Megacarpaea is more close to Goldbachia and Spirorrhynchus. The divergent time of the ephemeral plants is estimated between 14-6 Ma that is the middle to the late Miocene which is earlier than the previous estimation of from the late Miocene to the early Pliocene. The intensive divergence of the ephemera plants in the middle and the late Miocene might be closely related with the uplift of Qinghai-Xizang plateau which caused aridification in the central Asia and speed up the formation of arid and semi-arid climate and the development of the ephemeral plants in the area.

Key words： Brassicaceae; ephemerals; phylogeny; ITS; trnL-F; divergent time

参考文献

〔1〕 张立运.新疆莫索湾地区地区短命植物的初步研究〔J〕.植物生态学与地植物丛刊,1985,9(3):213-222.〔Zhang Liyun.A preliminary study on the ephemerals in the Mosowan District,Xinjiang〔J〕.Acta Phytoecologica et Geobotanica Sinica,1985,9(3):213-222.〕
〔2〕 毛祖美,张佃民.新疆北部早春短命植物区系纲要〔J〕.干旱区研究,1994,11(3):1-26.〔Mao Zumei,Zhang Dianmin.The conspectus of ephemeral flora in northern Xinjiang〔J〕.Arid Zone Research,1994,11(3):1-26.〕
〔3〕 Topping C J,Sunderland K D.Population dynamics and dispersal of Lepthyphantes tenuis in an ephemeral habitat〔J〕.Entomologia Experimentalis et Applicata,1998,87:29-41.
〔4〕 陶冶,张元明,周晓兵,等.类短命植物粗柄独尾草器官生物量分配与估测〔J〕.干旱区研究,2012,29(1):93-100.〔Tao Ye,Zhang Yuanming,Zhou Xiaobing,et al.Allocation and estimation of organ biomass of Eremurus inderiensis,an ephemeroid plant〔J〕.Arid Zone Research,2012,29(1):93-100.〕
〔5〕 Qian Y B,Wu Z N,Zhang L Y,et al.Spatial patterns of ephemeral plants in Gurbantunggut Desert〔J〕.Chinese Science Bulletin,2007,52:3 118-3 127.
〔6〕 刘忠权,刘彤,张荣,等.古尔班通古特沙漠南部短命植物群落物种多样性及空间分异〔J〕.生态学杂志,2011,30(1):45-52.〔Liu Zhongquan,Liu Tong,Zhang Rong,et al.Species diversity and spatial differentiation of ephemeral plant community in southern Gurbantunggut Desert〔J〕.Chinese Journal of Ecology,2011,30(1):45-52.〕
〔7〕 马生军,谭敦炎.短命植物甘新念珠芥(Neotorularia korolkovii)和宽翅菘蓝(Isatis violascens)的物候与性表达特征〔J〕.生态学报,2007,27(2):486-497.〔Ma Shengjun,Tan Dunyan.Phenology and sex expression of Junggar desert ephemerals Neotorularia korolkovii and Isatis violascens (Brassicaceae)〔J〕.Acta Ecologica Sinica,2007,27(2):486-497.〕
〔8〕 王烨.新疆早春短命及类短命植物的物候观测〔J〕.干旱区研究,1993,10(3):34-39.〔Wang Yie.Phenological observation of the early spring ephemeral and ephemeroid plant in Xinjiang〔J〕.Arid Zone Research,1993,10(3):34-39.〕
〔9〕 度忠云,周桂玲,阿不来提·哈德尔,等.十字花科8种植物叶表皮微形态特征〔J〕.新疆农业大学学报,2010,33(1):7-10.〔Du Zhongyun,Zhou Guiling,Abulaiti Hadeer,et al.Micromorphologic characteristic of leaf epidermis of eight species in Brassicaceae (Cruciferae)〔J〕.Journal of Xinjiang Agricultural University,2010,33(1):7-10.〕
〔10〕 樊丛照,赵惠新,高兴旺,等.两种短命植物种子萌发特性和幼苗生理的研究〔J〕.种子,2010,29(4):33-37.〔Fan Congzhao,Zhao Huixin,Gao Xingwang,et al.Study on seed germination characteristics and seedling physiological of two ephemera plants〔J〕.Seed,2010,29(4):33-37.〕
〔11〕 邱娟,谭敦炎,樊大勇.准噶尔荒漠早春短命植物的光合特性及生物量分配特点〔J〕.植物生态学报,2007,31(5):883-891.〔Qiu Juan,Tan Dunyan,Fan Dayong.Characteristics of photosynthesis and biomass allocation of spring ephemerals in the Junggar desert〔J〕.Journal of Plant Ecology,2007,31(5):883-891.〕
〔12〕 Lu J J,Tan D Y,Baskin J M,et al.Phenotypic plasticity and bet-hedging in a heterocarpic winter annual/spring ephemeral cold desert species of Brassicaceae〔J〕.Oikos,2012,121:357-366.
〔13〕 Sun Y,Tan D Y,Baskin C C,et al.Role of mucilage in seed dispersal and germination of the annual ephemeral Alyssum minus (Brassicaceae)〔J〕.Australia Journal of Botany,2012,60:439-449.
〔14〕 魏岩,周桂玲,谭敦炎.短命植物抱茎独行菜的生殖对策分析〔J〕.新疆农业大学学报,2003,26(3):37-39.〔Wei Yan,Zhou Guiling,Tan Dunyan.Reproductive strategies on ephemeral plant of Lepidium perfoliatum〔J〕.Journal of Xinjiang Agricultural University,2003,26(3):37-39.〕
〔15〕 黄建峰,张明理.中国鹤虱属(Lappula Moench)分子系统学研究〔J〕.干旱区研究,2012,29(5):811-815.〔Huang Jianfeng,Zhang Mingli.Study on molecular systematics of genus Lappula Moench in China〔J〕.Arid Zone Research,2012,29(5):811-815.〕
〔16〕 张哲,孔艳,李岩,等.基于DNA 条形码技术对新疆罂粟科部分植物系统发生分析〔J〕.干旱区研究, 2014,31(2):322-328.〔Zhang Zhe,Kong Yan,Li Yan,et al.Phylogeny of some Papaveraceae plants in Xinjiang based on DNA barcoding〔J〕.Arid Zone Research,2014,31(2):322-328.〕
〔17〕 Al-Shehbaz I A.A generic and tribal synopsis of the Brassicaceae (Cruciferae)〔J〕.Taxon,2012,61:931-954.
〔18〕 Fiebig A,Kimport R,Preuss D.Comparisons of pollen coat genes across Brassicaceae species reveal rapid evolution by repeat expansion and diversification〔J〕.Proceedings of the National Academy of Sciences of the United States of America,2004,101:3 286-3 291.
〔19〕 Franzke A,Lysak M A,Al-Shehbaz I A,et al.Cabbage family affairs:The evolutionary history of Brassicaceae〔J〕.Trends in Plant Science,2011,16:108-116.
〔20〕 German D A,Grant J R,Lysak M A,et al.Molecular phylogeny and systematics of the tribe Chorisporeae (Brassicaceae)〔J〕.Plant Systematics and Evolution,2011,294:65-86.
〔21〕 Hall J C,Tisdale T E,Donohue K,et al.Convergent evolution of a complex fruit structure in the tribe Brassiceae (Brassicaceae)〔J〕.American Journal of Botany,2011,98:1 989-2 003.
〔22〕 Jordon-Thaden I,Hase I,Al-Shehbaz I,et al.Molecular phylogeny and systematics of the genus Draba (Brassicaceae) and identification of its most closely related genera〔J〕.Molecular Phylogenetics and Evolution,2010,55:524-540.
〔23〕 Koch M A,Karl R,Kiefer C,et al.Colonizing the American continent:Systematics of the genus Arabis in north America (Brassicaceae)〔J〕.American Journal of Botany,2010,97:1 040-1 057.
〔24〕 Doyle J J.Isolation of plant DNA from fresh tissue〔J〕.Focus,1990,12:13-15.
〔25〕 Drummond A J,Suchard M A,Xie D,et al.Bayesian Phylogenetics with BEAUti and the BEAST 1.7〔J〕.Molecular Biology and Evolution,2012,29:1 969-1 973.
〔26〕 Beilstein M A,Nagalingum N S,Clements M D,et al.Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana〔J〕.Proceedings of the National Academy of Sciences of the United States of America,2010,107:18 724-18 728.
〔27〕 Schulz O E.Cruciferae〔C〕//Engler A,Prantl K.Die Natürlichen Pflanzenfamilien.Leipzig:Verlag von Wilhelm Engelmann,1936:227-658.
〔28〕 Al-Shehbaz I A,Beilstein M A,Kellogg E A.Systematics and phylogeny of the Brassicaceae (Cruciferae):An overview〔J〕.Plant Systematics and Evolution,2006,259:89-120.
〔29〕 Beilstein M A,Al-Shehbaz I A,Kellogg E A.Brassicaceae phylogeny and trichome evolution〔J〕.American Journal of Botany,2006,93:607-619.
〔30〕 Zhao B,Liu L,Tan D Y,et al.Analysis of phylogenetic relationships of Brassicaceae species based on Chs sequences〔J〕.Biochemical Systematics and Ecology,2010,38:731-739.
〔31〕 Lysak M A,Koch M A,Beaulieu J M,et al.The dynamic ups and downs of genome size evolution in Brassicaceae〔J〕.Molecular Biology and Evolution,2009,26:85-98.
〔32〕 Warwick S I,Sauder C A.Phylogeny of tribe Brassiceae(Brassicaceae) based on chloroplast restriction site polymorphisms and nuclear ribosomal internal transcribed spacer and chloroplast trnL intron sequences〔J〕.Canadian Journal of Botany,2005,83:467-483.
〔33〕 孙稚颖.中国十字花科植物部分属种的系统学研究〔D〕.济南:山东师范大学,2006.〔Sun Zhiying.Systematic Studies on Partial Genera and Species of Brassicaceae from Chian〔D〕.Jinan:Shandong Normal University,2006.〕
〔34〕 Rešetnik I,Satovic Z,Schneeweiss G M,et al.Phylogenetic relationships in Brassicaceae tribe Alysseae inferred from nuclear ribosomal and chloroplast DNA sequence data〔J〕.Molecular Phylogenetics and Evolution,2013,69:772-786.
〔35〕 Mummenhoff K,Bruggemann H,Bowman J L.Chloroplast DNA phylogeny and biogeography of Lepidium (Brassicaceae)〔J〕.American Journal of Botany,2001,88:2 051-2 063.
〔36〕 Al-Shehbaz I A,Mummenhoff K,Appel O.Cardaria coronopus and Stroganowia are united with Lepidium (Brassicaceae)〔J〕.Novon,2002,12:5-11.
〔37〕 刘彤,赵新俊,崔运河.天山北麓中段拟南芥(Arabidopsis thaliana)与相邻物种的分布格局及相互关系〔J〕.生态学报,2008,28(4):1 842-1 849.〔Liu Tong,Zhao Xinjun,Cui Yunhe,et al.Spatial associations and patterns of Arabidopsis thaliana and its adjacent species in the middle part of northern Tianshan Mountain〔J〕.Acta Ecologica Sinica,2008,28(4):1 842-1 849.〕
〔38〕 Galloway G L,Malmberg R L,Price R A.Phylogenetic utility of the nuclear gene arginine decarboxylase:An example from Brassicaceae〔J〕.Molecular Biology and Evolution,1998,15:1 312-1 320.
〔39〕 Koch M,Haubold B,Mitchell-Olds T.Molecular systematics of the Brassicaceae:Evidence from coding plastidic matK and nuclear Chs sequences〔J〕.American Journal of Botany,2001,88:534-544.
〔40〕 Li J J,Shi Y F,Li B Y.Uplift of the Qinghai-Xizang(Tibet) Plaeau and Global Change〔M〕.Lanzhou:Lanzhou University Press,1995.
〔41〕 Liu J Q,Wang Y J,Wang A L,et al.Radiation and diversification within the Ligularia-Cremanthodium-Parasenecio complex (Asteraceae) triggered by uplift of the Qinghai-Tibetan Plateau〔J〕.Molecular Phylogenetics and Evolution,2006,38:31-49.
〔42〕 Wang Y J,Susanna A,Von Raab-Straube E,et al.Island-like radiation of Saussurea (Asteraceae:Cardueae) triggered by uplifts of the Qinghai-Tibetan Plateau〔J〕.Biological Journal of the Linnean Society,2009,97:893-903.
〔43〕 Zhang M L,Fritsch P W.Evolutionary response of Caragana (Fabaceae) to Qinghai-Tibetan Plateau uplift and Asian interior aridification〔J〕.Plant Systematics and Evolution,2010,288:191-199.
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